#include <dataset.hpp>

Inheritance diagram for hdf5::node::Dataset:

[legend]

Collaboration diagram for hdf5::node::Dataset:

Public Member Functions
	Dataset ()=default
	default constructor More...

	Dataset (const Node &node)
	construct More...

	Dataset (const Group &base, const Path &path, const datatype::Datatype &type, const dataspace::Dataspace &space=dataspace::Scalar(), const property::LinkCreationList &lcpl=property::LinkCreationList(), const property::DatasetCreationList &dcpl=property::DatasetCreationList(), const property::DatasetAccessList &dapl=property::DatasetAccessList())
	constructor More...

dataspace::Dataspace	dataspace () const
	get dataspace of dataset More...

property::DatasetCreationList	creation_list () const
	get the dataset creation property list used for creation More...

property::DatasetAccessList	access_list () const
	get the dataset access property list for the instance More...

datatype::Datatype	datatype () const
	get datatype of dataset More...

void	extent (const Dimensions &dims) const
	set extent of the dataset More...

void	extent (size_t dim, ssize_t delta_elements) const

void	resize (const Dimensions &dims) const
	resize the dataset More...

void	refresh () const
	refresh the dataset (since hdf5 1.10.0) More...

template<typename T >
void	write (const T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const dataspace::Dataspace &file_space, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	write data to the dataset More...

template<typename T >
void	write (const T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	write data to the dataset More...

template<typename T >
void	read (T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const dataspace::Dataspace &file_space, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	read data from the dataset More...

template<typename T >
void	read (T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	read_reshape (T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	write (const T &data, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get())
	write entire dataset More...

template<typename T >
void	write (const T &data, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	write_reshape (const T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	write entire dataset More...

void	write (const char *data, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get())
	write entire dataset More...

void	write (const char *data, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	write_chunk (const T &data, std::vector< hsize_t > offset, std::uint32_t filter_mask=0, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get())
	write dataset chunk More...

template<typename T >
void	write_chunk (const T &data, std::vector< hsize_t > offset, std::uint32_t filter_mask=0, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	write_chunk (const T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, std::vector< hsize_t > &offset, std::uint32_t filter_mask=0, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	write dataset chunk More...

template<typename T >
std::uint32_t	read_chunk (T &data, std::vector< hsize_t > offset, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	read dataset chunk (since hdf5 1.10.2) More...

template<typename T >
std::uint32_t	read_chunk (T &data, const datatype::Datatype &mem_type, std::vector< hsize_t > &offset, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	read dataset chunk More...

hsize_t	chunk_storage_size (std::vector< hsize_t > offset) const
	read dataset chunk More...

template<typename T >
void	read (T &data, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get())
	read entire dataset More...

template<typename T >
void	read (T &data, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	write (const T &data, const dataspace::Selection &selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get())
	write data to a selection More...

template<typename T >
void	write (const T &data, const dataspace::Selection &selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	write_reshape (const T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const dataspace::Selection &selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	write data to a selection More...

template<typename T >
void	read (T &data, const dataspace::Selection &selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get())
	reading data from a selection More...

template<typename T >
void	read (T &data, const dataspace::Selection &selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const

template<typename T >
void	read_reshape (T &data, const datatype::Datatype &mem_type, const dataspace::Dataspace &mem_space, const dataspace::Selection &selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	reading data from a selection More...

template<typename T >
void	read (T &data, const datatype::Datatype &memory_type, const dataspace::Dataspace &memory_space, const dataspace::Selection &file_selection, const property::DatasetTransferList &dtpl=property::DatasetTransferList::get()) const
	reading data from a dataset More...

filter::ExternalFilters	filters () const
	get the dataset external filters for the instance More...

Public Member Functions inherited from hdf5::node::Node
	Node (ObjectHandle &&handle, const Link &link)
	constructor More...

	Node ()
	default constructor More...

	Node (const Node &)
	copy constructor More...

Node &	operator= (const Node &node)
	copy assignment More...

virtual	~Node ()
	destructor More...

NodeType	type () const
	return the node type More...

ObjectId	id () const
	get unique ID More...

	operator hid_t () const

bool	is_valid () const
	true if an object is valid More...

void	close ()
	close the node More...

const Link &	link () const
	return link to object More...

Additional Inherited Members
Public Attributes inherited from hdf5::node::Node
attribute::AttributeManager	attributes
	access to the attribute manager More...

Constructor & Destructor Documentation

◆ Dataset() [1/3]

hdf5::node::Dataset::Dataset ( )

default

Use default implementation here. We need this for some STL containers. After default construction the dataset is in an invalid state.

See also: is_valid()

◆ Dataset() [2/3]

hdf5::node::Dataset::Dataset ( const Node & node )

Construct a dataset from a node instance.

Exceptions

std::runtime_error in case that the node is not a dataset

Parameters

node	reference to the original node from which to construct the dataset.

◆ Dataset() [3/3]

hdf5::node::Dataset::Dataset	(	const Group &	base,
		const Path &	path,
		const datatype::Datatype &	type,
		const dataspace::Dataspace &	space = `dataspace::Scalar()`,
		const property::LinkCreationList &	lcpl = `property::LinkCreationList()`,
		const property::DatasetCreationList &	dcpl = `property::DatasetCreationList()`,
		const property::DatasetAccessList &	dapl = `property::DatasetAccessList()`
	)

Exceptions

std::runtime_error in case of a failure

Parameters

base	the base object for the dataset creation
path	the path to the new dataset
type	optional reference to a datatype
space	optional reference to a dataspace (default is a scalar one)
lcpl	optional reference to a link creation property list
dcpl	optional reference to a dataset creation property list
dapl	optional reference to a dataset access property list

Member Function Documentation

◆ access_list()

property::DatasetAccessList hdf5::node::Dataset::access_list ( ) const

Returns an instance of the dataset access property list for the dataset.

Exceptions

std::runtime_error in case of a failure

Returns: instance of DatasetAccessList

◆ chunk_storage_size()

hsize_t hdf5::node::Dataset::chunk_storage_size ( std::vector< hsize_t > offset ) const

Read a chunk storage size from a dataset to an instance of T.

Exceptions

std::runtime_error in case of a failure

Parameters

offset logical position of the first element of the chunk in the dataset's dataspace

Returns: the size in bytes for the chunk.

◆ creation_list()

property::DatasetCreationList hdf5::node::Dataset::creation_list ( ) const

Returns an instance of a dataset creation property list with the values used for the creation of the dataset.

Exceptions

std::runtime_error in case of a failure

Returns: instance of DatasetCreationList

◆ dataspace()

dataspace::Dataspace hdf5::node::Dataset::dataspace ( ) const

Return a new instance of the dataspace describing the dataset.

Exceptions

std::runtime_error in case of a failure

Returns: new dataspace instance

◆ datatype()

datatype::Datatype hdf5::node::Dataset::datatype ( ) const

Return an instance of the datatype describing the elements stored in the file.

Exceptions

std::runtime_error in case of a failure

Returns: new instance of datatype

◆ extent() [1/2]

void hdf5::node::Dataset::extent ( const Dimensions & dims ) const

Allows to change the extent (number of elements along each dimensions) of a dataset. It is important to note that in such a case a previously requested dataspace though remaining a valid object does no longer describe the datasets layout correctly. The number of elements can be increased or decreased within the limits of the dataspace originally used to create the dataset.

Exceptions

std::runtime_error in case of a failure

Parameters

dims	vector with new number of elements along each dimension

Deprecated:: this method is deprecated - use resize instead

◆ extent() [2/2]

void hdf5::node::Dataset::extent	(	size_t	dim,
		ssize_t	delta_elements
	)		const

◆ filters()

filter::ExternalFilters hdf5::node::Dataset::filters ( ) const

Returns an instance of the dataset external filters for the dataset.

Exceptions

std::runtime_error in case of a failure

Returns: instance of ExternalFilters

◆ read() [1/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const dataspace::Selection &	selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)

Reading data to an instance of T from a selection of a dataset. It reshapes the mem_space if its rank does not match to the selection rank

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	type of the destination object

Parameters

data	reference to the destination object
selection	reference to the selection
dtpl	reference to a dataset transfer property list

◆ read() [2/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const dataspace::Selection &	selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ read() [3/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const dataspace::Dataspace &	file_space,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

This template function a very simple wrapper around the original HDF5 C-API function. The major difference is that a type trait is used to obtain a pointer to the data passed as the first argument. This template is provided for maximum flexibility as it allows virtually to do everything which could be done with the C-API.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	type from which to write data

Parameters

data	const reference to the data source
mem_type	reference to the memory data type
mem_space	reference to the memory data space
file_space	reference to the dataspace in the file
dtpl	data transfer property list

◆ read() [4/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ read() [5/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const datatype::Datatype &	memory_type,
		const dataspace::Dataspace &	memory_space,
		const dataspace::Selection &	file_selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Exceptions

std::runtime_error in case of a failure

Parameters

data	reference to the target to which to read the data
memory_type	reference to the memory data type of the target
memory_space	reference to the memory data space of the target
file_selection	reference to the selection for the file dataspace
dtpl	optional reference to a dataset transfer property list

◆ read() [6/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)

Read the entire data from a dataset to an instance of T.

Exceptions

std::runtime_error in case of a failre

Template Parameters

T	destination type

Parameters

data	reference to the destination
dtpl	reference to a dataset transfer property list

◆ read() [7/7]

template<typename T >

void hdf5::node::Dataset::read	(	T &	data,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ read_chunk() [1/2]

template<typename T >

std::uint32_t hdf5::node::Dataset::read_chunk	(	T &	data,
		const datatype::Datatype &	mem_type,
		std::vector< hsize_t > &	offset,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Read a chunk from a dataset to an instance of T.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	source type

Parameters

data	reference to the source instance of T
mem_type	reference to the memory data type
offset	logical position of the first element of the chunk in the dataset's dataspace
dtpl	reference to a dataset transfer property list

Returns: filter_mask mask of which filters are used with the chunk

◆ read_chunk() [2/2]

template<typename T >

std::uint32_t hdf5::node::Dataset::read_chunk	(	T &	data,
		std::vector< hsize_t >	offset,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Read a chunk from a dataset to an instance of T.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	source type

Parameters

data	reference to the source instance of T
offset	logical position of the first element of the chunk in the dataset's dataspace
dtpl	reference to a dataset transfer property list

Returns: filter_mask mask of which filters are used with the chunk

◆ read_reshape() [1/2]

template<typename T >

void hdf5::node::Dataset::read_reshape	(	T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const dataspace::Selection &	selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Reading data to an instance of T from a selection of a dataset. This template method tries to deduce the memory type and memory space for the target type (where to write the data to) automatically using the appropriate type traits.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	type of the destination object

Parameters

data	reference to the destination object
mem_type	reference to the memory data type
mem_space	reference to the memory data space
selection	reference to the selection
dtpl	reference to a dataset transfer property list

◆ read_reshape() [2/2]

template<typename T >

void hdf5::node::Dataset::read_reshape	(	T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ refresh()

void hdf5::node::Dataset::refresh ( ) const

Exceptions

std::runtime_error in case of a failure

◆ resize()

void hdf5::node::Dataset::resize ( const Dimensions & dims ) const

Allows to change the shape (number of elements along each dimensions) of a dataset. It is important to note that in such a case a previously requested dataspace though remaining a valid object does no longer describe the datasets layout correctly. The number of elements can be increased or decreased within the limits of the dataspace originally used to create the dataset.

Exceptions

std::runtime_error in case of a failure

Parameters

dims	vector with new number of elements along each dimension

◆ write() [1/8]

void hdf5::node::Dataset::write	(	const char *	data,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)

Write the entire dataset from an instance of const char *

Exceptions

std::runtime_error in caes of a failure

Parameters

data	pointer to the source instance of const char *
dtpl	reference to a dataset transfer property list

◆ write() [2/8]

void hdf5::node::Dataset::write	(	const char *	data,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ write() [3/8]

template<typename T >

void hdf5::node::Dataset::write	(	const T &	data,
		const dataspace::Selection &	selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)

Write data from an instance of T to a selection of the dataset.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	type of the source

Parameters

data	reference to the source
selection	reference to the selection
dtpl	reference to a dataset transfer property list

◆ write() [4/8]

template<typename T >

void hdf5::node::Dataset::write	(	const T &	data,
		const dataspace::Selection &	selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ write() [5/8]

template<typename T >

void hdf5::node::Dataset::write	(	const T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const dataspace::Dataspace &	file_space,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

This template function a very simple wrapper around the original HDF5 C-API function. The major difference is that a type trait is used to obtain a pointer to the data passed as the first argument. This template is provided for maximum flexibility as it allows virtually to do everything which could be done with the C-API.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	type from which to write data

Parameters

data	const reference to the data source
mem_type	reference to the memory data type
mem_space	reference to the memory data space
file_space	reference to the dataspace in the file
dtpl	data transfer property list

◆ write() [6/8]

template<typename T >

void hdf5::node::Dataset::write	(	const T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

This function allows specification of the memory dataspace and dataspace and optionally the dataset transfer property list.

◆ write() [7/8]

template<typename T >

void hdf5::node::Dataset::write	(	const T &	data,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)

Write the entire dataset from an instance of T.

Exceptions

std::runtime_error in caes of a failure

Template Parameters

T	source type

Parameters

data	reference to the source instance of T
dtpl	reference to a dataset transfer property list

◆ write() [8/8]

template<typename T >

void hdf5::node::Dataset::write	(	const T &	data,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ write_chunk() [1/3]

template<typename T >

void hdf5::node::Dataset::write_chunk	(	const T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		std::vector< hsize_t > &	offset,
		std::uint32_t	filter_mask = `0`,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Write a dataset chunk from an instance of T.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	source type

Parameters

data	reference to the source instance of T
mem_type	reference to the memory data type
mem_space	reference to the memory data space
offset	logical position of the first element of the chunk in the dataset's dataspace
filter_mask	mask of which filters are used with the chunk
dtpl	reference to a dataset transfer property list

◆ write_chunk() [2/3]

template<typename T >

void hdf5::node::Dataset::write_chunk	(	const T &	data,
		std::vector< hsize_t >	offset,
		std::uint32_t	filter_mask = `0`,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)

Write a dataset chunk from an instance of T.

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	source type

Parameters

data	reference to the source instance of T
offset	logical position of the first element of the chunk in the dataset's dataspace
filter_mask	mask of which filters are used with the chunk
dtpl	reference to a dataset transfer property list

◆ write_chunk() [3/3]

template<typename T >

void hdf5::node::Dataset::write_chunk	(	const T &	data,
		std::vector< hsize_t >	offset,
		std::uint32_t	filter_mask = `0`,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

◆ write_reshape() [1/2]

template<typename T >

void hdf5::node::Dataset::write_reshape	(	const T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const dataspace::Selection &	selection,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Write data from an instance of T to a selection of the dataset. It reshapes the mem_space if its rank does not match to the selection rank

Exceptions

std::runtime_error in case of a failure

Template Parameters

T	type of the source

Parameters

data	reference to the source
mem_type	reference to the memory data type
mem_space	reference to the memory data space
selection	reference to the selection
dtpl	reference to a dataset transfer property list

◆ write_reshape() [2/2]

template<typename T >

void hdf5::node::Dataset::write_reshape	(	const T &	data,
		const datatype::Datatype &	mem_type,
		const dataspace::Dataspace &	mem_space,
		const property::DatasetTransferList &	dtpl = `property::DatasetTransferList::get()`
	)		const

Write the entire dataset from an instance of T. It reshapes the mem_space if its rank does not match to the selection rank

Exceptions

std::runtime_error in caes of a failure

Template Parameters

T	source type

Parameters

data	reference to the source instance of T
mem_type	reference to the memory data type
mem_space	reference to the memory data space
dtpl	reference to a dataset transfer property list

The documentation for this class was generated from the following file:

/home/jenkins/h5cpp/src/h5cpp/node/dataset.hpp

Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

◆ Dataset() [1/3]

◆ Dataset() [2/3]

◆ Dataset() [3/3]

Member Function Documentation

◆ access_list()

◆ chunk_storage_size()

◆ creation_list()

◆ dataspace()

◆ datatype()

◆ extent() [1/2]

◆ extent() [2/2]

◆ filters()

◆ read() [1/7]

◆ read() [2/7]

◆ read() [3/7]

◆ read() [4/7]

◆ read() [5/7]

◆ read() [6/7]

◆ read() [7/7]

◆ read_chunk() [1/2]

◆ read_chunk() [2/2]

◆ read_reshape() [1/2]

◆ read_reshape() [2/2]

◆ refresh()

◆ resize()

◆ write() [1/8]

◆ write() [2/8]

◆ write() [3/8]

◆ write() [4/8]

◆ write() [5/8]

◆ write() [6/8]

◆ write() [7/8]

◆ write() [8/8]

◆ write_chunk() [1/3]

◆ write_chunk() [2/3]

◆ write_chunk() [3/3]

◆ write_reshape() [1/2]

◆ write_reshape() [2/2]